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RNAseq (VIPER)
Peak Calling
Copy Number Analysis
Variant Calling
Instrumentation
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Service Description
Alignment and variant calling, which can include single-nucleotide variants (SNVs), copy number variants (CNVs), and structural variants (SVs).
Required Input Files:
Fastq.gz files
Organism (Human or Mouse).
Normal controls - if doing comparative analysis
Pipeline Tools:
BWA-MEM v0.7.15
FastQC
GATK4.1.8.0
Picard
Strelka2
MuSE
[VariantNormalize]
VEPv110
VCF2MAF
CNVkit
LUMPY
SvABA
Manta
AnnotSV
Primary Output Files
VCF/MAF files
Deduped sorted aligned .bam/bai files
Picard Metrics
CNV plots
Structural Variant Analysis
Summary Reports
HOME
ABOUT US
SERVICES
RNA Services
>
mRNAseq
TotalRNAseq
Low Input mRNAseq
Low Input TotalRNAseq
Targeted RNAseq
small RNAseq
DNA Services
>
Whole Genome Sequencing
Whole Exome Sequencing
Methylation Profiling
ChIPseq/Cut & Run
ATACseq
Single Cell Sequencing Services
Bioinformatics Services
>
RNAseq (VIPER)
Peak Calling
Copy Number Analysis
Variant Calling
Instrumentation
SAMPLE SUBMISSION
DATA TRANSFER
PRICING
FAQ