Peak Calling Pipeline

Service Description

Required Input Files:

• Fastq.gz Files (single-end and paired-end supported)
• Sample Metadata: IP, Input, IgG, H3K27Ac, etc. as well as input/IP pairs for background correction.

Pipeline Tools:

• BWA
• MACS3
• deepTools
• Homer

Primary Output Files:

• bigwig (.bw) files for genome browsing
• Annotated Peak Table
• TSS Read density heatmaps
• Graphical Summary Report
• Motifs